A few links to software and documentation for

mathematical modelling

 

Professional Programmer's Guide to Fortran77 - This pdf-file contains the (minor updated and corrected) text of Professional Programmer's Guide to Fortran77 published by Pitman in 1988 and written by Clive G. Page, University of Leicester, UK. Since the book has gone out of print, Dr. Page has made the text freely available. Please note that the text is due to copyright, i.e, ©Clive G. Page, 1988, 1995. The text may be copied and reproduced without fee, as long as attribution to the author is preserved.

FKN - FORTRAN source program "FKN.f" and input file "FKN.INP" for simulating the Field-Körös-Noyes (FKN) mechanism of the Belousov-Zhabotinsky reaction by the Oregonator model. Numerical and graphical output is included.

ODEPACK - Contains LSODE (Livermore Solver of Ordinary Differential Equations) and other freely available FORTRAN software packages for solving ODEs. Alan C.Hindmarsh has developed LSODE and the ODEPACK families of high performance ordinary differential equation (ODE) solvers.

www.perl.org - The Perl Programming Language. Perl is a highly capable, feature-rich programming language. It runs on over 100 platforms from portables to mainframes. Perl is suitable for both rapid prototyping and large scale development projects. Free.

Berkeley Madonna - Berkeley Madonna is a fast, convenient, general purpose differential equation solver. It is relatively inexpensive and runs on both Windows and Mac OS.

COPASI - Complex Pathway Simulator. COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie's stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. Free.

XPPAUT - XPPAUT is a tool for solving differential equations, difference equations, delay equations, functional equations, boundary value problems, and stochastic equations. Free.

gnuplot - Great plotting package freely available for UNIX, PC and Mac.